FASTA is a software package for sequence alignment of proteins and nucleic acids.
I have a small fasta file of DNA sequences which looks like this: >NM_000016 700 200 234 ACATATTGGAGGCCGAAACAATGAGGCGTGATCAACTCAGTATATCAC >NM_000775 700 124 236 CTAACCTCTCCCAGTGTGGAACCTCTATCTCATGAGAAAGCTGGGATGAG >…
r subset bioinformatics fastaI'm trying to read a FASTA file and then find specific motif(string) and print out the sequence and number …
python fastaI have a fasta file where the sequences are broken up with newlines. I'd like to remove the newlines. Here's …
unix awk newline bioinformatics fastaI have the following FASTA file: >header1 CGCTCTCTCCATCTCTCTACCCTCTCCCTCTCTCTCGGATAGCTAGCTCTTCTTCCTCCT TCCTCCGTTTGGATCAGACGAGAGGGTATGTAGTGGTGCACCACGAGTTGGTGAAGC >header2 GGT >header3 TTATGAT My desired output: >…
bash awk fastaI am trying to extract a DNA sequence from this FASTA file to a specified length of bases per line, …
perl bioinformatics subroutine fastaOk so I need to extract part of a sequence from a FASTA file, using python (biopython, http://biopython.org/…
python python-2.7 biopython fastaWhen I use write.fasta in seqinr, the file that it outputs looks like this: >Sequence name 1 >Sequence …
r fastaI'm trying to concatenate hundreds of .fasta files into a single, large fasta file containing all of the sequences. I …
python concatenation fasta