Biopython is a set of freely available tools for biological computation written in Python.
I have a DNA sequence and would like to get reverse complement of it using Python. It is in one …
python list bioinformatics biopython dna-sequenceI am trying to pass BioPython sequences to Ilya Stepanov's implementation of Ukkonen's suffix tree algorithm in iPython's notebook environment. …
python ipython bioinformatics biopython suffix-treeFYI: this is NOT a duplicate! Before running my python code I installed biopython in the cmd prompt: pip install …
python python-3.x pip bioinformatics biopythonI am using Python and a regular expression to find an ORF (open reading frame). Find a sub-string a string …
python python-3.x python-2.7 biopythonI have a fasta file as shown below. I would like to convert the three letter codes to one letter …
python r bioinformatics biopythonIn the Biopython installation instructions, it says that if Biopython doesn't work I'm supposed to do this: export PYTHONPATH = $PYTHONPATH':/…
python cygwin biopythonOk so I need to extract part of a sequence from a FASTA file, using python (biopython, http://biopython.org/…
python python-2.7 biopython fastaI try to score the already-aligned sequences. Let say seq1 = 'PAVKDLGAEG-ASDKGT--SHVVY----------TI-QLASTFE' seq2 = 'PAVEDLGATG-ANDKGT--LYNIYARNTEGHPRSTV-QLGSTFE' with given parameters substitution matrix : blosum62 gap …
python bioinformatics biopythonI would like to extract chains from pdb files. I have a file named pdb.txt which contains pdb IDs …
python bash bioinformatics biopythontrying to install Biopython on Fedora 21, Python 2.7. I've done the following [mike@localhost Downloads](17:32)$ sudo pip2.7 install biopython You are …
python fedora biopython python-install