For programming-related questions related to Bioinformatics.
I have a small fasta file of DNA sequences which looks like this: >NM_000016 700 200 234 ACATATTGGAGGCCGAAACAATGAGGCGTGATCAACTCAGTATATCAC >NM_000775 700 124 236 CTAACCTCTCCCAGTGTGGAACCTCTATCTCATGAGAAAGCTGGGATGAG >…
r subset bioinformatics fastaI am trying to pass BioPython sequences to Ilya Stepanov's implementation of Ukkonen's suffix tree algorithm in iPython's notebook environment. …
python ipython bioinformatics biopython suffix-treeI have a large data.frame of character data that I want to convert based on what is commonly called …
r dataframe bioinformaticsI am working with a unix shell script that does genome construction then creates a phylogeny. Depending on the genome …
shell unix text-files bioinformatics genomeFYI: this is NOT a duplicate! Before running my python code I installed biopython in the cmd prompt: pip install …
python python-3.x pip bioinformatics biopythonI am trying to create a function in R that will allow me to filter my data set based on …
r filtering bioinformatics data-processingI have two data.frames each with three columns: chrom, start & stop, let's call them rangesA and rangesB. For …
r bioinformaticsI have a fasta file where the sequences are broken up with newlines. I'd like to remove the newlines. Here's …
unix awk newline bioinformatics fastaI am trying to extract a DNA sequence from this FASTA file to a specified length of bases per line, …
perl bioinformatics subroutine fastaI have a DataFrame that originates from a df.groupby().size() operation, and looks like this: Localization RNA level cytoplasm 1 …
python pandas bioinformatics