Top "Sequence-alignment" questions

A type problem in which two or more sequences need to be lined up with each other, generally for the purposes of identifying similarities between them.

global sequence alignment dynamic programming finding the minimum in a matrix

I have 2 sequences, AACAGTTACC and TAAGGTCA, and I'm trying to find a global sequence alignment. I managed to create a 2…

java arrays matrix dynamic-programming sequence-alignment
Traceback in Smith-Wateman algorithm with affine gap penalty

I'm trying to implement the Smith-Waterman algorithm for local sequence alignment using the affine gap penalty function. I think I …

python bioinformatics biopython sequence-alignment