I want to use a logit model and trying to import statsmodels library. My Version: Python 3.6.8
The best suggestion I got is to downgrade scipy but unclear how to and to what version should I downgrade. Please help how to resolve. https://github.com/statsmodels/statsmodels/issues/5747
import statsmodels.formula.api as smf
ImportError Traceback (most recent call last)
<ipython-input-52-f897a2d817de> in <module>
----> 1 import statsmodels.formula.api as smf
~/anaconda3/envs/py36/lib/python3.6/site-packages/statsmodels/formula/api.py in <module>
13 from statsmodels.robust.robust_linear_model import RLM
14 rlm = RLM.from_formula
---> 15 from statsmodels.discrete.discrete_model import MNLogit
16 mnlogit = MNLogit.from_formula
17 from statsmodels.discrete.discrete_model import Logit
~/anaconda3/envs/py36/lib/python3.6/site-packages/statsmodels/discrete/discrete_model.py in <module>
43
44 from statsmodels.base.l1_slsqp import fit_l1_slsqp
---> 45 from statsmodels.distributions import genpoisson_p
46
47 try:
~/anaconda3/envs/py36/lib/python3.6/site-packages/statsmodels/distributions/__init__.py in <module>
1 from .empirical_distribution import ECDF, monotone_fn_inverter, StepFunction
----> 2 from .edgeworth import ExpandedNormal
3 from .discrete import genpoisson_p, zipoisson, zigenpoisson, zinegbin
~/anaconda3/envs/py36/lib/python3.6/site-packages/statsmodels/distributions/edgeworth.py in <module>
5 import numpy as np
6 from numpy.polynomial.hermite_e import HermiteE
----> 7 from scipy.misc import factorial
8 from scipy.stats import rv_continuous
9 import scipy.special as special
ImportError: cannot import name 'factorial'```
Update: upgrading statsmodels
will fix this issue nowadays: pip install statsmodels --upgrade
.
From this issue on statsmodels' github repo, the solution appears to be to downgrade SciPy to version 1.2 (current version is 1.3, which you appear to use).
At least for me, SciPy 1.2 has the factorial
function in the scipy.misc
package.
You can do
python3.6 -m pip install scipy==1.2 --upgrade
Use the --user
option with that if you don't have standard install rights.
Perhaps you want to avoid using pip, since you're using Conda. You should be able to pin the version of scipy in Conda as well, but if you don't plan to add any other packages to your environment, just use the pip
version.
Of course, downgrading SciPy may cause issues elsewhere, but that's hard to foresee, especially without knowing exactly what other packages and dependencies you have installed; you'll just have to find out. Fingers crossed for not ending up in dependency hell (as you've already on the doorstep).
For the more curious, scipy.misc.factorial
has been deprecated since version 1.0; scipy.special.factorial
should be used instead.
Importing in version 1.2 does not, however, show any clear warning, nor does using it. This might explain why statsmodels
still uses the old import. A fix is on the way for the next statsmodels
release.