Correlation among multiple categorical variables (Pandas)

Question

I have a data set made of 22 categorical variables (non-ordered). I would like to visualize their correlation in a nice heatmap. Since the Pandas built-in function

DataFrame.corr(method='pearson', min_periods=1)

only implement correlation coefficients for numerical variables (Pearson, Kendall, Spearman), I have to aggregate it myself to perform a chi-square or something like it and I am not quite sure which function use to do it in one elegant step (rather than iterating through all the cat1*cat2 pairs). To be clear, this is what I would like to end up with (a dataframe):

         cat1  cat2  cat3  
  cat1|  coef  coef  coef  
  cat2|  coef  coef  coef
  cat3|  coef  coef  coef

Any ideas with pd.pivot_table or something in the same vein?

thanks in advance D.

Answer 1

You can using pd.factorize

df.apply(lambda x : pd.factorize(x)[0]).corr(method='pearson', min_periods=1)
Out[32]: 
     a    c    d
a  1.0  1.0  1.0
c  1.0  1.0  1.0
d  1.0  1.0  1.0

Data input

df=pd.DataFrame({'a':['a','b','c'],'c':['a','b','c'],'d':['a','b','c']})

Update

from scipy.stats import chisquare

df=df.apply(lambda x : pd.factorize(x)[0])+1

pd.DataFrame([chisquare(df[x].values,f_exp=df.values.T,axis=1)[0] for x in df])

Out[123]: 
     0    1    2    3
0  0.0  0.0  0.0  0.0
1  0.0  0.0  0.0  0.0
2  0.0  0.0  0.0  0.0
3  0.0  0.0  0.0  0.0

df=pd.DataFrame({'a':['a','d','c'],'c':['a','b','c'],'d':['a','b','c'],'e':['a','b','c']})