Top "Pheatmap" questions

Pheatmap annotation colors and border

Pheatmap library(pheatmap) takes annotation_colorsto add the header ID colors on the top of each heatmap column. I want …

r pheatmap

R pheatmap: change annotation colors and prevent graphics window from popping up

Following up on this question, I found the pheatmap function (which offers me a lot more control on the stuff …

r colors heatmap pheatmap

pheatmap formatting in R: Legend size and creating a square plot

Pheatmap only creates a square plot when legend=FALSE. I have tried using par() to allow more oma() and mar() …

r formatting heatmap pheatmap

R - Legend title or units when using Pheatmap

I am using pheatmap to create a heatmap of values and would like to label the legend with the units …

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Edit row and col names in Pheatmap

I want to edit row and col names in my pheatmap or eventually delete and add new row and col …

r pheatmap

pheatmap scale="row" giving Error in hclust(d, method = method) : NA/NaN/Inf in foreign function call

I am trying to create a heatmap with gene expression values with the package pheatmap in R. I have used …

r heatmap scaling na pheatmap

Define specific value colouring with pheatmap in R

Let's say: m1<-matrix(rnorm(1000),ncol=100) and defining colours: cols = colorRampPalette(c("white", "red"))(30) I am producing a heatmap …

r matrix colors pheatmap

Set 0-point for pheatmap in R

How can you set the 0-point on the color scale to white in this heatmap? Does it use the breaks …

r pheatmap

pheatmap in R. How to get clusters

I'm using pheatmap with large data. My purpose is to clusterize rows and columns and to analyze main clusters. I …

r pheatmap

How to draw pheatmap plot to screen and also save to file

I'm working with the pheatmap package. By default, it draws the plot to the screen. In my case, that means …

r ggplot2 pheatmap