R: Cannot install rJava; what is r-api-3.4?
I am on an Ubuntu 18.04 machine with R version 3.5.1, installed following this link. I am trying to install the CRAN package rJava, which I do the following way (as seen here):
sudo apt-get install r-cran-rjava
However, I get this:
The following packages have unmet dependencies:
r-cran-rjava : Depends: r-api-3.4
E: Unable to correct problems, you have held broken packages.
But when I try:
sudo apt-get install r-api-3.4
I get:
E: Package 'r-api-3.4' has no installation candidate
How to overcome this problem with r-api-3.4? Basically, I need to install rJava to be able to install and use XLConnect... In Ubuntu 16.04, I had no problems whatsoever...
EDIT:
Apparently, r-api-3.4 should be provided by r-base-core. I do have r-base-core installed in its newest version, why do I still see errors then?
Answer
The API versions are provided by r-base-core. The reason is that binary packages (sometimes) depend on the R version, for which they have been build. This way you can only install packages that fit together.
In your case you have packages from the main Ubuntu repository (r-base-core 3.4.x providing r-api-3.4 and r-cran-rjava requiring r-api-3.4) and from a custom PPA (r-base-core 3.5.y providing r-api-3.5). One option would be to only use the version from Ubuntu, i.e. R 3.4. Another solution is to add an additional PPA:
sudo add-apt-repository ppa:marutter/c2d4u3.5
sudo apt-get update
After that a version of r-cran-rjava requiring r-api-3.5 should be available.
See also http://rubuntu.netlify.com/post/2018-05-25-announcing-c2d4u3-5/ and http://rubuntu.netlify.com/post/2018-06-11-r-3.5-on-debian-and-ubuntu-update/.
Finally, you always have the possibility to install the R packages directly from CRAN. That is currently the only possibility when you are using the CRAN supplied R backports on Debian.