Hadoop: Datanode process killed

hadoop hdfs
Hans Müller picture Hans Müller · Apr 15, 2013 · Viewed 30.6k times · Source

I am currently using Hadoop-2.0.3-alpha and after I could work perfectly with HDFS (copying files into HDFS, getting success from an external framework, using the webfrontend), after a new start of my VM, the datanode process is stopping after a while. The namenode process and all yarn processes work without a problem. I installed Hadoop in a folder under an additional user, as I also still have installed Hadoop 0.2, which worked fine too. Taking a look at the log-file of all datanode processes I got the following information:

2013-04-11 16:23:50,475 WARN org.apache.hadoop.util.NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
2013-04-11 16:24:17,451 INFO org.apache.hadoop.metrics2.impl.MetricsConfig: loaded properties from hadoop-metrics2.properties
2013-04-11 16:24:23,276 INFO org.apache.hadoop.metrics2.impl.MetricsSystemImpl: Scheduled snapshot period at 10 second(s).
2013-04-11 16:24:23,279 INFO org.apache.hadoop.metrics2.impl.MetricsSystemImpl: DataNode metrics system started
2013-04-11 16:24:23,480 INFO org.apache.hadoop.hdfs.server.datanode.DataNode: Configured hostname is user-VirtualBox
2013-04-11 16:24:28,896 INFO org.apache.hadoop.hdfs.server.datanode.DataNode: Opened streaming server at /0.0.0.0:50010
2013-04-11 16:24:29,239 INFO org.apache.hadoop.hdfs.server.datanode.DataNode: Balancing bandwith is 1048576 bytes/s
2013-04-11 16:24:38,348 INFO org.mortbay.log: Logging to org.slf4j.impl.Log4jLoggerAdapter(org.mortbay.log) via org.mortbay.log.Slf4jLog
2013-04-11 16:24:44,627 INFO org.apache.hadoop.http.HttpServer: Added global filter 'safety' (class=org.apache.hadoop.http.HttpServer$QuotingIn putFilter)
2013-04-11 16:24:45,163 INFO org.apache.hadoop.http.HttpServer: Added filter static_user_filter (class=org.apache.hadoop.http.lib.StaticUserWebFil ter$StaticUserFilter) to context datanode
2013-04-11 16:24:45,164 INFO org.apache.hadoop.http.HttpServer: Added filter static_user_filter (class=org.apache.hadoop.http.lib.StaticUserWebFil ter$StaticUserFilter) to context logs
2013-04-11 16:24:45,164 INFO org.apache.hadoop.http.HttpServer: Added filter static_user_filter (class=org.apache.hadoop.http.lib.StaticUserWebFil ter$StaticUserFilter) to context static
2013-04-11 16:24:45,355 INFO org.apache.hadoop.hdfs.server.datanode.DataNode: Opened info server at 0.0.0.0:50075
2013-04-11 16:24:45,508 INFO org.apache.hadoop.hdfs.server.datanode.DataNode: dfs.webhdfs.enabled = false
2013-04-11 16:24:45,536 INFO org.apache.hadoop.http.HttpServer: Jetty bound to port 50075
2013-04-11 16:24:45,576 INFO org.mortbay.log: jetty-6.1.26
2013-04-11 16:25:18,416 INFO org.mortbay.log: Started [email protected]:50075
2013-04-11 16:25:42,670 INFO org.apache.hadoop.ipc.Server: Starting Socket Reader #1 for port 50020
2013-04-11 16:25:44,955 INFO org.apache.hadoop.hdfs.server.datanode.DataNode: Opened IPC server at /0.0.0.0:50020
2013-04-11 16:25:45,483 INFO org.apache.hadoop.hdfs.server.datanode.DataNode: Refresh request received for nameservices: null
2013-04-11 16:25:47,079 INFO org.apache.hadoop.hdfs.server.datanode.DataNode: Starting BPOfferServices for nameservices: <default>
2013-04-11 16:25:47,660 INFO org.apache.hadoop.hdfs.server.datanode.DataNode: Block pool <registering> (storage id unknown) service to localhost/127.0.0.1:8020 starting to offer service
2013-04-11 16:25:50,515 INFO org.apache.hadoop.ipc.Server: IPC Server Responder: starting
2013-04-11 16:25:50,631 INFO org.apache.hadoop.ipc.Server: IPC Server listener on 50020: starting
2013-04-11 16:26:15,068 INFO org.apache.hadoop.hdfs.server.common.Storage: Lock on /home/hadoop/workspace/hadoop_space/hadoop23/dfs/data/in_use.lock acquired by nodename 3099@user-VirtualBox
2013-04-11 16:26:15,720 FATAL org.apache.hadoop.hdfs.server.datanode.DataNode: Initialization failed for block pool Block pool BP-474150866-127.0.1.1-1365686732002 (storage id DS-317990214-127.0.1.1-50010-1365505141363) service to localhost/127.0.0.1:8020
java.io.IOException: Incompatible clusterIDs in /home/hadoop/workspace/hadoop_space/hadoop23/dfs/data: namenode clusterID = CID-1745a89c-fb08-40f0-a14d-d37d01f199c3; datanode clusterID = CID-bb3547b0-03e4-4588-ac25-f0299ff81e4f
at org.apache.hadoop.hdfs.server.datanode.DataStorage .doTransition(DataStorage.java:391)
at org.apache.hadoop.hdfs.server.datanode.DataStorage .recoverTransitionRead(DataStorage.java:191)
at org.apache.hadoop.hdfs.server.datanode.DataStorage .recoverTransitionRead(DataStorage.java:219)
at org.apache.hadoop.hdfs.server.datanode.DataNode.in itStorage(DataNode.java:850)
at org.apache.hadoop.hdfs.server.datanode.DataNode.in itBlockPool(DataNode.java:821)
at org.apache.hadoop.hdfs.server.datanode.BPOfferServ ice.verifyAndSetNamespaceInfo(BPOfferService.java: 280)
at org.apache.hadoop.hdfs.server.datanode.BPServiceAc tor.connectToNNAndHandshake(BPServiceActor.java:22 2)
at org.apache.hadoop.hdfs.server.datanode.BPServiceAc tor.run(BPServiceActor.java:664)
at java.lang.Thread.run(Thread.java:722)
2013-04-11 16:26:16,212 WARN org.apache.hadoop.hdfs.server.datanode.DataNode: Ending block pool service for: Block pool BP-474150866-127.0.1.1-1365686732002 (storage id DS-317990214-127.0.1.1-50010-1365505141363) service to localhost/127.0.0.1:8020
2013-04-11 16:26:16,276 INFO org.apache.hadoop.hdfs.server.datanode.DataNode: Removed Block pool BP-474150866-127.0.1.1-1365686732002 (storage id DS-317990214-127.0.1.1-50010-1365505141363)
2013-04-11 16:26:18,396 WARN org.apache.hadoop.hdfs.server.datanode.DataNode: Exiting Datanode
2013-04-11 16:26:18,940 INFO org.apache.hadoop.util.ExitUtil: Exiting with status 0
2013-04-11 16:26:19,668 INFO org.apache.hadoop.hdfs.server.datanode.DataNode: SHUTDOWN_MSG:
/************************************************** **********
SHUTDOWN_MSG: Shutting down DataNode at user-VirtualBox/127.0.1.1
************************************************** **********/

Any ideas? May be I made a mistake during the installation process? But it is strange, that it worked once. I also have to say, that if I am logged in as my additional user to execute the commands ./hadoop-daemon.sh start namenode and the same with the datanode, I need to add sudo.

I used this installation guide: http://jugnu-life.blogspot.ie/2012/0...rial-023x.html

By the way, I use the Oracle Java-7 version.

Answer

rVr picture rVr · Apr 16, 2013

The problem could be that the namenode was formatted after the cluster was set up and the datanodes were not, so the slaves are still referring to the old namenode.

We have to delete and recreate the folder /home/hadoop/dfs/data on the local filesystem for the datanode.

  • Check your hdfs-site.xml file to see where dfs.data.dir is pointing to
  • and delete that folder
  • and then restart the datanode daemon on the machine

The steps above should recreate the folder and resolve the problem.

Please share your config info if the instructions above do not work.

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