No data nodes are started

hadoop hdfs
Aaron S picture Aaron S · Apr 11, 2012 · Viewed 75.7k times · Source

I am trying to setup Hadoop version 0.20.203.0 in a pseudo distributed configuration using the following guide:

http://www.javacodegeeks.com/2012/01/hadoop-modes-explained-standalone.html

After running the start-all.sh script I run "jps".

I get this output:

4825 NameNode
5391 TaskTracker
5242 JobTracker
5477 Jps
5140 SecondaryNameNode

When I try to add information to the hdfs using:

bin/hadoop fs -put conf input

I got an error:

hadoop@m1a2:~/software/hadoop$ bin/hadoop fs -put conf input
12/04/10 18:15:31 WARN hdfs.DFSClient: DataStreamer Exception: org.apache.hadoop.ipc.RemoteException: java.io.IOException: File /user/hadoop/input/core-site.xml could only be replicated to 0 nodes, instead of 1
        at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBlock(FSNamesystem.java:1417)
        at org.apache.hadoop.hdfs.server.namenode.NameNode.addBlock(NameNode.java:596)
        at sun.reflect.GeneratedMethodAccessor6.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.lang.reflect.Method.invoke(Method.java:616)
        at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:523)
        at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1383)
        at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1379)
        at java.security.AccessController.doPrivileged(Native Method)
        at javax.security.auth.Subject.doAs(Subject.java:416)
        at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1059)
        at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1377)

        at org.apache.hadoop.ipc.Client.call(Client.java:1030)
        at org.apache.hadoop.ipc.RPC$Invoker.invoke(RPC.java:224)
        at $Proxy1.addBlock(Unknown Source)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.lang.reflect.Method.invoke(Method.java:616)
        at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:82)
        at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:59)
        at $Proxy1.addBlock(Unknown Source)
        at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.locateFollowingBlock(DFSClient.java:3104)
        at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.nextBlockOutputStream(DFSClient.java:2975)
        at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.access$2000(DFSClient.java:2255)
        at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream$DataStreamer.run(DFSClient.java:2446)

12/04/10 18:15:31 WARN hdfs.DFSClient: Error Recovery for block null bad datanode[0] nodes == null
12/04/10 18:15:31 WARN hdfs.DFSClient: Could not get block locations. Source file "/user/hadoop/input/core-site.xml" - Aborting...
put: java.io.IOException: File /user/hadoop/input/core-site.xml could only be replicated to 0 nodes, instead of 1
12/04/10 18:15:31 ERROR hdfs.DFSClient: Exception closing file /user/hadoop/input/core-site.xml : org.apache.hadoop.ipc.RemoteException: java.io.IOException: File /user/hadoop/input/core-site.xml could only be replicated to 0 nodes, instead of 1
        at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBlock(FSNamesystem.java:1417)
        at org.apache.hadoop.hdfs.server.namenode.NameNode.addBlock(NameNode.java:596)
        at sun.reflect.GeneratedMethodAccessor6.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.lang.reflect.Method.invoke(Method.java:616)
        at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:523)
        at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1383)
        at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1379)
        at java.security.AccessController.doPrivileged(Native Method)
        at javax.security.auth.Subject.doAs(Subject.java:416)
        at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1059)
        at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1377)

org.apache.hadoop.ipc.RemoteException: java.io.IOException: File /user/hadoop/input/core-site.xml could only be replicated to 0 nodes, instead of 1
        at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBlock(FSNamesystem.java:1417)
        at org.apache.hadoop.hdfs.server.namenode.NameNode.addBlock(NameNode.java:596)
        at sun.reflect.GeneratedMethodAccessor6.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.lang.reflect.Method.invoke(Method.java:616)
        at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:523)
        at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1383)
        at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1379)
        at java.security.AccessController.doPrivileged(Native Method)
        at javax.security.auth.Subject.doAs(Subject.java:416)
        at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1059)
        at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1377)

        at org.apache.hadoop.ipc.Client.call(Client.java:1030)
        at org.apache.hadoop.ipc.RPC$Invoker.invoke(RPC.java:224)
        at $Proxy1.addBlock(Unknown Source)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.lang.reflect.Method.invoke(Method.java:616)
        at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:82)
        at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:59)
        at $Proxy1.addBlock(Unknown Source)
        at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.locateFollowingBlock(DFSClient.java:3104)
        at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.nextBlockOutputStream(DFSClient.java:2975)
        at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.access$2000(DFSClient.java:2255)
        at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream$DataStreamer.run(DFSClient.java:2446)

I am not totally sure but I believe that this may have to do with the fact that the datanode is not running.

Does anybody know what I have done wrong, or how to fix this problem?

EDIT: This is the datanode.log file:

2012-04-11 12:27:28,977 INFO org.apache.hadoop.hdfs.server.datanode.DataNode: STARTUP_MSG:
/************************************************************
STARTUP_MSG: Starting DataNode
STARTUP_MSG:   host = m1a2/139.147.5.55
STARTUP_MSG:   args = []
STARTUP_MSG:   version = 0.20.203.0
STARTUP_MSG:   build = http://svn.apache.org/repos/asf/hadoop/common/branches/branch-0.20-security-203 -r 1099333; compiled by 'oom' on Wed May  4 07:57:50 PDT 2011
************************************************************/
2012-04-11 12:27:29,166 INFO org.apache.hadoop.metrics2.impl.MetricsConfig: loaded properties from hadoop-metrics2.properties
2012-04-11 12:27:29,181 INFO org.apache.hadoop.metrics2.impl.MetricsSourceAdapter: MBean for source MetricsSystem,sub=Stats registered.
2012-04-11 12:27:29,183 INFO org.apache.hadoop.metrics2.impl.MetricsSystemImpl: Scheduled snapshot period at 10 second(s).
2012-04-11 12:27:29,183 INFO org.apache.hadoop.metrics2.impl.MetricsSystemImpl: DataNode metrics system started
2012-04-11 12:27:29,342 INFO org.apache.hadoop.metrics2.impl.MetricsSourceAdapter: MBean for source ugi registered.
2012-04-11 12:27:29,347 WARN org.apache.hadoop.metrics2.impl.MetricsSystemImpl: Source name ugi already exists!
2012-04-11 12:27:29,615 ERROR org.apache.hadoop.hdfs.server.datanode.DataNode: java.io.IOException: Incompatible namespaceIDs in /tmp/hadoop-hadoop/dfs/data: namenode namespaceID = 301052954; datanode namespaceID = 229562149
        at org.apache.hadoop.hdfs.server.datanode.DataStorage.doTransition(DataStorage.java:232)
        at org.apache.hadoop.hdfs.server.datanode.DataStorage.recoverTransitionRead(DataStorage.java:147)
        at org.apache.hadoop.hdfs.server.datanode.DataNode.startDataNode(DataNode.java:354)
        at org.apache.hadoop.hdfs.server.datanode.DataNode.<init>(DataNode.java:268)
        at org.apache.hadoop.hdfs.server.datanode.DataNode.makeInstance(DataNode.java:1480)
        at org.apache.hadoop.hdfs.server.datanode.DataNode.instantiateDataNode(DataNode.java:1419)
        at org.apache.hadoop.hdfs.server.datanode.DataNode.createDataNode(DataNode.java:1437)
        at org.apache.hadoop.hdfs.server.datanode.DataNode.secureMain(DataNode.java:1563)
        at org.apache.hadoop.hdfs.server.datanode.DataNode.main(DataNode.java:1573)

2012-04-11 12:27:29,617 INFO org.apache.hadoop.hdfs.server.datanode.DataNode: SHUTDOWN_MSG:
/************************************************************
SHUTDOWN_MSG: Shutting down DataNode at m1a2/139.147.5.55
************************************************************/

Answer

Chris Shain picture Chris Shain · Apr 11, 2012

That error you are getting in the DN log is described here: http://www.michael-noll.com/tutorials/running-hadoop-on-ubuntu-linux-multi-node-cluster/#java-io-ioexception-incompatible-namespaceids

From that page:

At the moment, there seem to be two workarounds as described below.

Workaround 1: Start from scratch

I can testify that the following steps solve this error, but the side effects won’t make you happy (me neither). The crude workaround I have found is to:

  1. Stop the cluster
  2. Delete the data directory on the problematic DataNode: the directory is specified by dfs.data.dir in conf/hdfs-site.xml; if you followed this tutorial, the relevant directory is /app/hadoop/tmp/dfs/data
  3. Reformat the NameNode (NOTE: all HDFS data is lost during this process!)
  4. Restart the cluster

When deleting all the HDFS data and starting from scratch does not sound like a good idea (it might be ok during the initial setup/testing), you might give the second approach a try.

Workaround 2: Updating namespaceID of problematic DataNodes

Big thanks to Jared Stehler for the following suggestion. I have not tested it myself yet, but feel free to try it out and send me your feedback. This workaround is “minimally invasive” as you only have to edit one file on the problematic DataNodes:

  1. Stop the DataNode
  2. Edit the value of namespaceID in /current/VERSION to match the value of the current NameNode
  3. Restart the DataNode

If you followed the instructions in my tutorials, the full path of the relevant files are:

NameNode: /app/hadoop/tmp/dfs/name/current/VERSION

DataNode: /app/hadoop/tmp/dfs/data/current/VERSION

(background: dfs.data.dir is by default set to

${hadoop.tmp.dir}/dfs/data, and we set hadoop.tmp.dir

in this tutorial to /app/hadoop/tmp).

If you wonder how the contents of VERSION look like, here’s one of mine:

# contents of /current/VERSION

namespaceID=393514426

storageID=DS-1706792599-10.10.10.1-50010-1204306713481

cTime=1215607609074

storageType=DATA_NODE

layoutVersion=-13

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