Top "Bioconductor" questions

Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data in the R language.

R on MacOS Error: vector memory exhausted (limit reached?)

I'm trying to run an R script (in particular, I am using the "getLineages" function from the Bioconductor package, Slingshot. …

r macos bioconductor
installation path not writable R, unable to update packages

I am trying to install Bioconductor into R, using the code on their website. When I type in the code (…

r bioconductor mgcv
differences in heatmap/clustering defaults in R (heatplot versus heatmap.2)?

I'm comparing two ways of creating heatmaps with dendrograms in R, one with made4's heatplot and one with gplots …

r cluster-analysis heatmap hierarchical-clustering bioconductor
package cannot be unloaded in R: cannot install package

I am trying to install a package in R, but cannot get around the following error. What is going on? :( …

r fedora bioconductor
How can I convert Ensembl ID to gene symbol in R?

I have a data.frame containing Ensembl IDs in one column; I would like to find corresponding gene symbols for …

r dataframe bioinformatics bioconductor
How to perform clustering without removing rows where NA is present in R

I have a data which contain some NA value in their elements. What I want to do is to perform …

r cluster-analysis bioconductor
Problems installing data.table for R

I'm trying to install data.table library for R, but I can't get it to work.I've tried using both …

r data.table bioconductor install.packages
Downgrade R version (no issues with Bioconductor installation)

I can't access many Bioconductor packages in R 3.1.1 and I am quite disappointed with that. How can I downgrade from …

r bioconductor downgrade
Expressionset - phenodata

I must start by saying that I'm just beginning to program using R. I'm unable to create expressionset of my …

r bioconductor
'lib = "/usr/lib/R/library"' is not writable" while installing R Bioconductor package

everyone! I'm trying to install Bioconductor package "cummeRbund" and constantly fail. I've tried biocLite("cummeRbund") command with BiocInstaller enabled, install.…

r bioconductor