Unable to install R package in Ubuntu 11.04
I'm new to Linux and R.
I installed R 2.12 in Ubuntu 11.04. Today I tried to install a new package, so I ran the following command:
install.packages('XML')
But the installation failed and gave the following information:
* installing *source* package ‘XML’ ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
No ability to remove finalizers on externalptr objects in this verison of R
checking for sed... /bin/sed
checking for pkg-config... /usr/bin/pkg-config
checking for xml2-config... no
Cannot find xml2-config
ERROR: configuration failed for package ‘XML’
* removing ‘/home/spirit/R/i686-pc-linux-gnu-library/2.12/XML’
The downloaded packages are in
‘/tmp/RtmpoZYxnv/downloaded_packages’
Warning message:
In install.packages("XML") :
installation of package 'XML' had non-zero exit status
I also tried:
sudo install.packages('XML')
But it gives the same error information.
Anyone can give me any advice?
Answer
The install.packages method
You need to install the ubuntu package libxml2-dev So in a shell prompt type:
sudo apt-get update
sudo apt-get install libxml2-dev
You will need special sudo powers for this.
Ubuntu package method
As Richie and Dirk mentioned, you can also use:
sudo apt-get install r-cran-xml
If you go down this path, I would recommend that you check out the R ubuntu sources page which will ensure you have a current version of R and the associated R packages. This could be important if you are using the LTS version of ubuntu.