Socket.IO seems to be the most popular and active WebSocket emulation library. Juggernaut uses it to create a complete pub/sub system.
Faye is also popular and active, and has its own javascript library, making its complete functionality comparable to Juggernaut. Juggernaut uses node for its server, and Faye can use either node or rack. Juggernaut uses Redis for persistence (correction: it uses Redis for pub/sub), and Faye only keeps state in memory.
Disclosure: I am the author of Faye.
Faye probably looks a lot more complex compared to Juggernaut because Juggernaut delegates more, e.g. it delegates transport negotiation to Socket.IO and message routing to Redis. These are both fine decisions, but my decision to use Bayeux means I have to do more work myself.
As for design philosophy, Faye's overriding goal is that it should work everywhere the Web is available and should be absolutely trivial to get going with. I'ts really simple to get started with but its extensibility means it can be customized in quite powerful ways, for example you can turn it into a server-to-client push service (i.e. stop arbitrary clients pushing to it) by adding authentication extensions.
There is also work underway to make it more flexible on the server side. I'm looking at adding clustering support, and making the core pub-sub engine pluggable so you could use Faye as a stateless web frontend for another pub-sub system like Redis or AMQP.
I hope this has been helpful.