How to avoid "cannot load such file -- utils/popen" from homebrew on OSX

Question

I'm getting an error when I run brew in the terminal:

 /System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/lib/ruby/2.0.0/rubygems/core_ext/kernel_require.rb:55:in `require': cannot load such file -- utils/popen (LoadError)
from /System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/lib/ruby/2.0.0/rubygems/core_ext/kernel_require.rb:55:in `require'
from /usr/local/Library/Homebrew/utils.rb:6:in `<top (required)>'
from /System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/lib/ruby/2.0.0/rubygems/core_ext/kernel_require.rb:55:in `require'
from /System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/lib/ruby/2.0.0/rubygems/core_ext/kernel_require.rb:55:in `require'
from /usr/local/Library/Homebrew/global.rb:9:in `<top (required)>'
from /System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/lib/ruby/2.0.0/rubygems/core_ext/kernel_require.rb:55:in `require'
from /System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/lib/ruby/2.0.0/rubygems/core_ext/kernel_require.rb:55:in `require'
from /usr/local/Library/brew.rb:16:in `<main>'

These are my gem settings:

- RUBYGEMS VERSION: 2.0.14
- RUBY VERSION: 2.0.0 (2014-02-24 patchlevel 451) [universal.x86_64-darwin13]
- INSTALLATION DIRECTORY: /Library/Ruby/Gems/2.0.0
- RUBY EXECUTABLE: /System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/bin/ruby
- EXECUTABLE DIRECTORY: /usr/bin
- RUBYGEMS PLATFORMS:
  - ruby
  - universal-darwin-13
- GEM PATHS:
  - /Library/Ruby/Gems/2.0.0
  - /Users/ronaldkwan/.gem/ruby/2.0.0
  - /System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/lib/ruby/gems/2.0.0
- GEM CONFIGURATION:
  - :update_sources => true
  - :verbose => true
  - :backtrace => false
  - :bulk_threshold => 1000

Answer 1

The problem mainly occurs after updating OS X to El Capitan (OS X 10.11) or macOS Sierra (macOS 10.12).

This is because of file permission issues with El Capitan’s or later macOS's new SIP process. Try changing the permissions for the /usr/local directory:

$ sudo chown -R $(whoami):admin /usr/local  

If it still doesn't work, use these steps inside a terminal session and everything will be fine:

cd /usr/local/Library/Homebrew  
git reset --hard  
git clean -df
brew update

This may be because homebrew is not updated.