R v3.4.0-2 unable to find libgfortran.so.3 on Arch

r gfortran archlinux pacman-package-manager
Chris C picture Chris C · Jun 20, 2017 · Viewed 9.9k times · Source

I was just on vacation for a month so am unable to say the exact point at which this happened, but R from the official Arch repos is now unable to start, citing 

/usr/lib64/R/bin/exec/R: error while loading shared libraries: 
libgfortran.so.3: cannot open shared object file: No such file or directory

I thought that perhaps a symlink was improperly placed or destroyed, so I looked in /usr/lib to try to find it:

ls -halt /usr/lib/libgfortran.so.*

lrwxrwxrwx 1 root root   20 May 16 03:01 /usr/lib/libgfortran.so.4 -> libgfortran.so.4.0.0
-rwxr-xr-x 1 root root 7.1M May 16 03:01 /usr/lib/libgfortran.so.4.0.0

Has libfortran.so.3 been superseded by libgfortran.so.4 in Arch? If so, are there any possible workarounds for getting R to run with an older version?

pacman -Qi r

Name            : r
Version         : 3.4.0-2
Description     : Language and environment for statistical computing and graphics
Architecture    : x86_64
URL             : http://www.r-project.org/
Licenses        : GPL
Groups          : None
Provides        : None
Depends On      : blas  lapack  bzip2  libpng  libjpeg  libtiff  ncurses  pcre  readline  zlib  perl  gcc-libs  libxt  libxmu  pango  xz  desktop-file-utils  zip  unzip
Optional Deps   : tk: tcl/tk interface [installed]
                  texlive-bin: latex sty files [installed]
Required By     : None
Optional For    : graphviz
Conflicts With  : None
Replaces        : None
Installed Size  : 58.04 MiB
Packager        : Evangelos Foutras <[email protected]>
Build Date      : Tue 25 Apr 2017 05:04:31 AM EDT
Install Date    : Tue 20 Jun 2017 12:27:06 PM EDT
Install Reason  : Explicitly installed
Install Script  : No
Validated By    : Signature

Edit: If anyone else comes across this, the r-devel AUR correctly compiles and runs, so hopefully on the next version bump the issue will be resolved.

Answer

Vladimir F picture Vladimir F · Jun 20, 2017

Indeed, gfortran 7 bumps the ligfortran version to version 4. See http://gcc.1065356.n8.nabble.com/patch-fortran-PR77828-Linking-gfortran-7-compiled-program-with-libgfortran-of-5-x-allowed-but-crashes-td1311625.html It is not backwards compatible and some APIs have changed.

If you install an older version of gfortran you will get libgfortran.so.3. It is completely fine to have multiple versions in your system. Maybe there is a way how to rebuild R for version 4, but it will be possibly more work. See other answers how to rebuild the software https://stackoverflow.com/a/50744705/721644

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