Using R and plot.ly - how do I script saving my output as a webpage

Slavatron picture Slavatron · Jan 3, 2016 · Viewed 22k times · Source

I want to make some interactive graphs using R and plot.ly. When I run the following code in R-Studio, it produces an interactive graph.

library(plotly)
set.seed(100)
d <- diamonds[sample(nrow(diamonds), 1000), ]
plot_ly(d, x = carat, y = price, text = paste("Clarity: ", clarity),
    mode = "markers", color = carat, size = carat)

After producing this graph, when I click on the "Export" button in the Plot window of R-Studio, it gives me the option to save the plot as a webpage. How can I script the process of saving produced plots as webpages? My ultimate goal is to run Rscripts iteratively from inside a bash script to produce multiple webpages.

Answer

Andrew picture Andrew · Jan 5, 2016

Assign the plot_ly object to a variable and then use htmlwidgets::saveWidget() to save the actual file, like so:

library(plotly)
set.seed(100)
d <- diamonds[sample(nrow(diamonds), 1000), ]
p <- plot_ly(d, x = carat, y = price, text = paste("Clarity: ", clarity),
             mode = "markers", color = carat, size = carat)
htmlwidgets::saveWidget(as_widget(p), "index.html")