Merge data frame with SpatialPolygonsDataFrame
I want to merge a SpatialPolygonsDataFrame :
# From https://www.census.gov/geo/maps-data/data/cbf/cbf_state.html
states <- readOGR(dsn = "./cb_2014_us_state_20m.shp",
layer = "cb_2014_us_state_20m", verbose = FALSE)
with a normal data frame:
my_counts <- data.frame(
State = c(
"CA", "TX", "IL", "FL", "NY", "OH",
"NJ", "GA", "MI", "PA", "MA", "CO", "AZ", "NC", "VA", "WA", "IN",
"MD", "MN", "WI", "MO", "TN", "IA", "KY", "LA", "SC", "CT", "AL",
"KS", "OR", "OK", "AR", "NV", "UT", "NE", "ID", "MS", "DC", "NM",
"NH", "ME", "AK", "RI", "MT", "HI", "WV", "SD", "ND", "DE", "VT",
"WY", "PR", "GU", "VI", "MP", "AS", "na", "MH", "FM", "PW"
),
count = c(
1590533L, 1016328L, 754535L, 742603L, 714205L,
538719L, 477278L, 452064L, 437162L, 428616L, 420332L, 391084L,
380853L, 354601L, 342533L, 335505L, 294670L, 286026L, 273427L,
246172L, 238968L, 236037L, 235030L, 209514L, 199013L, 191707L,
185521L, 179931L, 163477L, 159862L, 142610L, 136006L, 120111L,
117338L, 112671L, 106176L, 102564L, 100168L, 97496L, 69881L,
69508L, 68684L, 65631L, 62109L, 61123L, 57300L, 57254L, 56091L,
51696L, 33944L, 32136L, 4822L, 598L, 468L, 49L, 19L, 17L,
11L, 2L, 1L
)
)
The goal is to use the result to make a map with leaflet
I tried sp::merge
df1 <- sp::merge(x= states, y=my_counts)
but I get an error:
Error in table(y[, by.y]) : attempt to set an attribute on NULL
Answer
Caveat: I've never done this before so I'm "feeling my way around". First look at the object-states:
Note: this was with rgdal_0.9-3 and sp_1.1-1 loaded under R 3.2.1 (and with GDAL installed on my OSX system, from kingchaos, IIRC):
> str(states)
Formal class 'SpatialPolygonsDataFrame' [package "sp"] with 5 slots
..@ data :'data.frame': 52 obs. of 9 variables:
.. ..$ STATEFP : Factor w/ 52 levels "01","02","04",..: 5 9 10 11 13 14 16 18 19 21 ...
.. ..$ STATENS : Factor w/ 52 levels "00068085","00294478",..: 22 17 2 18 27 28 29 30 16 19 ...
.. ..$ AFFGEOID: Factor w/ 52 levels "0400000US01",..: 5 9 10 11 13 14 16 18 19 21 ...
.. ..$ GEOID : Factor w/ 52 levels "01","02","04",..: 5 9 10 11 13 14 16 18 19 21 ...
.. ..$ STUSPS : Factor w/ 52 levels "AK","AL","AR",..: 5 8 10 11 14 15 13 18 19 21 ...
.. ..$ NAME : Factor w/ 52 levels "Alabama","Alaska",..: 5 9 10 11 13 14 16 18 19 21 ...
.. ..$ LSAD : Factor w/ 1 level "00": 1 1 1 1 1 1 1 1 1 1 ...
.. ..$ ALAND : num [1:52] 4.03e+11 1.58e+08 1.39e+11 1.49e+11 2.14e+11 ...
.. ..$ AWATER : num [1:52] 2.05e+10 1.86e+07 3.14e+10 4.95e+09 2.40e+09 ...
..@ polygons :List of 52
.. ..$ :Formal class 'Polygons' [package "sp"] with 5 slots
.. .. .. ..@ Polygons :List of 6
.. .. .. .. ..$ :Formal class 'Polygon' [package "sp"] with 5 slots
.. .. .. .. .. .. ..@ labpt : num [1:2] -118.4 33.4
.. .. .. .. .. .. ..@ area : num 0.0259
.. .. .. .. .. .. ..@ hole : logi FALSE
##### Snipped rest of output ............................
So after looking for help on merge and reading:
?merge # and choosing the option for:
Merge a Spatial* object having attributes with a data.frame
(in package sp in library /Library/Frameworks/R.framework/Versions/3.2/Resources/library)
I decided to try (and appear to have succeeded:
> newobj <- merge(states, my_counts, by.x="STUSPS", by.y="State")
Warning message:
In .local(x, y, ...) : 8 records in y cannot be matched to x
> names(newobj@data)
[1] "STUSPS" "STATEFP" "STATENS" "AFFGEOID" "GEOID" "NAME"
[7] "LSAD" "ALAND" "AWATER" "count"
The warning makes sense. You seem to have some extra "States" not anticipated by the authors of that "states" shp-file:
> length( table(my_counts$State))
[1] 60
> length( unique(states@data$STUSPS) )
[1] 52
The moral
You should look at the names-values in the two objects when you are merging:
> names(states)
[1] "STATEFP" "STATENS" "AFFGEOID" "GEOID" "STUSPS" "NAME" "LSAD"
[8] "ALAND" "AWATER"
> names(my_counts)
[1] "State" "count"