When using summarise
with plyr
's ddply
function, empty categories are dropped by default. You can change this behavior by adding .drop = FALSE
. However, this doesn't work when using summarise
with dplyr
. Is there another way to keep empty categories in the result?
Here's an example with fake data.
library(dplyr)
df = data.frame(a=rep(1:3,4), b=rep(1:2,6))
# Now add an extra level to df$b that has no corresponding value in df$a
df$b = factor(df$b, levels=1:3)
# Summarise with plyr, keeping categories with a count of zero
plyr::ddply(df, "b", summarise, count_a=length(a), .drop=FALSE)
b count_a
1 1 6
2 2 6
3 3 0
# Now try it with dplyr
df %.%
group_by(b) %.%
summarise(count_a=length(a), .drop=FALSE)
b count_a .drop
1 1 6 FALSE
2 2 6 FALSE
Not exactly what I was hoping for. Is there a dplyr
method for achieving the same result as .drop=FALSE
in plyr
?
The issue is still open, but in the meantime, especially since your data are already factored, you can use complete
from "tidyr" to get what you might be looking for:
library(tidyr)
df %>%
group_by(b) %>%
summarise(count_a=length(a)) %>%
complete(b)
# Source: local data frame [3 x 2]
#
# b count_a
# (fctr) (int)
# 1 1 6
# 2 2 6
# 3 3 NA
If you wanted the replacement value to be zero, you need to specify that with fill
:
df %>%
group_by(b) %>%
summarise(count_a=length(a)) %>%
complete(b, fill = list(count_a = 0))
# Source: local data frame [3 x 2]
#
# b count_a
# (fctr) (dbl)
# 1 1 6
# 2 2 6
# 3 3 0