Which conventions for naming variables and functions do you favor in R code?
As far as I can tell, there are several different conventions, all of which coexist in cacophonous harmony:
1. Use of period separator, e.g.
stock.prices <- c(12.01, 10.12)
col.names <- c('symbol','price')
Pros: Has historical precedence in the R community, prevalent throughout the R core, and recommended by Google's R Style Guide.
Cons: Rife with object-oriented connotations, and confusing to R newbies
2. Use of underscores
stock_prices <- c(12.01, 10.12)
col_names <- c('symbol','price')
Pros: A common convention in many programming langs; favored by Hadley Wickham's Style Guide, and used in ggplot2 and plyr packages.
Cons: Not historically used by R programmers; is annoyingly mapped to '<-' operator in Emacs-Speaks-Statistics (alterable with 'ess-toggle-underscore').
3. Use of mixed capitalization (camelCase)
stockPrices <- c(12.01, 10.12)
colNames <- c('symbol','price')
Pros: Appears to have wide adoption in several language communities.
Cons: Has recent precedent, but not historically used (in either R base or its documentation).
Finally, as if it weren't confusing enough, I ought to point out that the Google Style Guide argues for dot notation for variables, but mixed capitalization for functions.
The lack of consistent style across R packages is problematic on several levels. From a developer standpoint, it makes maintaining and extending other's code difficult (esp. where its style is inconsistent with your own). From a R user standpoint, the inconsistent syntax steepens R's learning curve, by multiplying the ways a concept might be expressed (e.g. is that date casting function asDate(), as.date(), or as_date()? No, it's as.Date()).
Good previous answers so just a little to add here:
underscores are really annoying for ESS users; given that ESS is pretty widely used you won't see many underscores in code authored by ESS users (and that set includes a bunch of R Core as well as CRAN authors, excptions like Hadley notwithstanding);
dots are evil too because they can get mixed up in simple method dispatch; I believe I once read comments to this effect on one of the R list: dots are a historical artifact and no longer encouraged;
so we have a clear winner still standing in the last round: camelCase. I am also not sure if I really agree with the assertion of 'lacking precendent in the R community'.
And yes: pragmatism and consistency trump dogma. So whatever works and is used by colleagues and co-authors. After all, we still have white-space and braces to argue about :)