How does one do a full join using data.table?

Paul Murray picture Paul Murray · Mar 2, 2013 · Viewed 10.2k times · Source

In the data.table FAQ, the nomatch = NA parameter is said to be akin to an outer join. However, I haven't been able to get data.table to do a full outer join – only right outer joins.

For example:

a <- data.table("dog" = c(8:12), "cat" = c(15:19))

   dog cat
1:   8  15
2:   9  16
3:  10  17
4:  11  18
5:  12  19

b <- data.table("dog" = 1:10, "bullfrog" = 11:20)

    dog bullfrog
 1:   1       11
 2:   2       12
 3:   3       13
 4:   4       14
 5:   5       15
 6:   6       16
 7:   7       17
 8:   8       18
 9:   9       19
10:  10       20

setkey(a, dog)
setkey(b, dog)

a[b, nomatch = NA]

    dog cat bullfrog
 1:   1  NA       11
 2:   2  NA       12
 3:   3  NA       13
 4:   4  NA       14
 5:   5  NA       15
 6:   6  NA       16
 7:   7  NA       17
 8:   8  15       18
 9:   9  16       19
10:  10  17       20

So, nomatch = NA produces a right outer join (which is the default). What if I need a full join? For example:

merge(a, b, by = "dog", all = TRUE) 
# Or with plyr:
join(a, b, by = "dog", type = "full")

    dog cat bullfrog
 1:   1  NA       11
 2:   2  NA       12
 3:   3  NA       13
 4:   4  NA       14
 5:   5  NA       15
 6:   6  NA       16
 7:   7  NA       17
 8:   8  15       18
 9:   9  16       19
10:  10  17       20
11:  11  18       NA
12:  12  19       NA

Is that possible with data.table?

Answer

Ricardo Saporta picture Ricardo Saporta · Mar 2, 2013

You actually have it right there. Use merge.data.table which is exactly what you are doing when you call

merge(a, b, by = "dog", all = TRUE)

since a is a data.table, merge(a, b, ...) calls merge.data.table(a, b, ...)