How do I add different trend lines in R?

grasingerm picture grasingerm · Feb 27, 2013 · Viewed 82.6k times · Source

I know how to add a linear trend line using the lm and abline functions, but how do I add other trend lines, such as, logarithmic, exponential, and power trend lines?

Answer

thelatemail picture thelatemail · Feb 27, 2013

Here's one I prepared earlier:

# set the margins
tmpmar <- par("mar")
tmpmar[3] <- 0.5
par(mar=tmpmar)

# get underlying plot
x <- 1:10
y <- jitter(x^2)
plot(x, y, pch=20)

# basic straight line of fit
fit <- glm(y~x)
co <- coef(fit)
abline(fit, col="blue", lwd=2)

# exponential
f <- function(x,a,b) {a * exp(b * x)}
fit <- nls(y ~ f(x,a,b), start = c(a=1, b=1)) 
co <- coef(fit)
curve(f(x, a=co[1], b=co[2]), add = TRUE, col="green", lwd=2) 

# logarithmic
f <- function(x,a,b) {a * log(x) + b}
fit <- nls(y ~ f(x,a,b), start = c(a=1, b=1)) 
co <- coef(fit)
curve(f(x, a=co[1], b=co[2]), add = TRUE, col="orange", lwd=2) 

# polynomial
f <- function(x,a,b,d) {(a*x^2) + (b*x) + d}
fit <- nls(y ~ f(x,a,b,d), start = c(a=1, b=1, d=1)) 
co <- coef(fit)
curve(f(x, a=co[1], b=co[2], d=co[3]), add = TRUE, col="pink", lwd=2) 

Add a descriptive legend:

# legend
legend("topleft",
    legend=c("linear","exponential","logarithmic","polynomial"),
    col=c("blue","green","orange","pink"),
    lwd=2,
    )

Result:

enter image description here

A generic and less long-hand way of plotting the curves is to just pass x and the list of coefficients to the curve function, like:

curve(do.call(f, c(list(x), coef(fit)) ), add=TRUE)