Check for installed packages in R

r r-package
sinclairjesse picture sinclairjesse · Jun 28, 2012 · Viewed 11.1k times · Source

Based on the answer to this question: Elegant way to check for missing packages and install them?

I'm using the following code to make sure that all packages are installed when I upgrade R, or set up other users:

list.of.packages <- c("RODBC", "reshape2", "plyr")
new.packages <- list.of.packages[!(list.of.packages %in% installed.packages()[,"Package"])]
if(length(new.packages)) install.packages(new.packages)

I've placed it in my .First function in my .Rprofile, but when I start up R it gives the following error and continues starting up:

Error in match(x, table, nomatch = 0L) : 
  could not find function "installed.packages"

If I run the code after I get a prompt it works fine. Any ideas why?

Thanks!

Answer

joran picture joran · Jun 28, 2012

It appears from reading ?Startup that:

Next, if a function .First is found on the search path, it is executed as .First(). Finally, function .First.sys() in the base package is run. This calls require to attach the default packages specified by options("defaultPackages").

Now, installed.packages is in the utils package, which is typically one of the default packages. So it's not available at the time .First is called.

Perhaps try replacing installed.packages with utils::installed.packages?

As Josh notes below my eyes skimmed over the piece that addresses this issue directly, namely:

Note that when the site and user profile files are sourced only the base package is loaded, so objects in other packages need to be referred to by e.g. utils::dump.frames or after explicitly loading the package concerned.

Related questions

How to load packages in R automatically?

Could you suggest me a way for loading packages in R automatically? I mean, I want to start a session in R without needing to use library('package name') several times. Suppose I downloaded all packages I'll want to use …

Read More
Creating a local R package repository

I would like to create a local R package repository such that users in my company can install packages from it and the system admins can update the local repo periodically. Access to the CRAN mirrors is currently denied. Is …

Read More
Can't download data from Yahoo Finance using Quantmod in R

I'm trying to download data from Yahoo using this code: library(quantmod) getSymbols("WOW", auto.assign=F) This has worked for me in the past in every occasion except now, 5 days before my group assignment is due. Except now I …

Read More