The piece of code that I have looks some what like this:
glbl_array = # a 3 Gb array
def my_func( args, def_param = glbl_array):
#do stuff on args and def_param
if __name__ == '__main__':
pool = Pool(processes=4)
pool.map(my_func, range(1000))
Is there a way to make sure (or encourage) that the different processes does not get a copy of glbl_array but shares it. If there is no way to stop the copy I will go with a memmapped array, but my access patterns are not very regular, so I expect memmapped arrays to be slower. The above seemed like the first thing to try. This is on Linux. I just wanted some advice from Stackoverflow and do not want to annoy the sysadmin. Do you think it will help if the the second parameter is a genuine immutable object like glbl_array.tostring()
.
You can use the shared memory stuff from multiprocessing
together with Numpy fairly easily:
import multiprocessing
import ctypes
import numpy as np
shared_array_base = multiprocessing.Array(ctypes.c_double, 10*10)
shared_array = np.ctypeslib.as_array(shared_array_base.get_obj())
shared_array = shared_array.reshape(10, 10)
#-- edited 2015-05-01: the assert check below checks the wrong thing
# with recent versions of Numpy/multiprocessing. That no copy is made
# is indicated by the fact that the program prints the output shown below.
## No copy was made
##assert shared_array.base.base is shared_array_base.get_obj()
# Parallel processing
def my_func(i, def_param=shared_array):
shared_array[i,:] = i
if __name__ == '__main__':
pool = multiprocessing.Pool(processes=4)
pool.map(my_func, range(10))
print shared_array
which prints
[[ 0. 0. 0. 0. 0. 0. 0. 0. 0. 0.]
[ 1. 1. 1. 1. 1. 1. 1. 1. 1. 1.]
[ 2. 2. 2. 2. 2. 2. 2. 2. 2. 2.]
[ 3. 3. 3. 3. 3. 3. 3. 3. 3. 3.]
[ 4. 4. 4. 4. 4. 4. 4. 4. 4. 4.]
[ 5. 5. 5. 5. 5. 5. 5. 5. 5. 5.]
[ 6. 6. 6. 6. 6. 6. 6. 6. 6. 6.]
[ 7. 7. 7. 7. 7. 7. 7. 7. 7. 7.]
[ 8. 8. 8. 8. 8. 8. 8. 8. 8. 8.]
[ 9. 9. 9. 9. 9. 9. 9. 9. 9. 9.]]