I have created a scatter plot using seaborn:
import seaborn as sns
sns.set(style="ticks", color_codes=True)
g=sns.scatterplot(x="length", y="coverage", data=df, hue = 'Products', edgecolors=None, alpha = 0.7)
g.set(yscale="log")
plt.xlabel("Length(bp)")
plt.ylabel("Coverage")
plt.legend(loc = 'lower right')
plt.savefig('ATN_plot.png',dpi = 600)
The original data(Partial):
contig length coverage pathway Products
53 1230 2423 stigmatellin Yes
58 1195 885 curacin Yes
65 1161 598 jamaicamide Yes
68 1159 8001 jamaicamide Yes
79 1113 1423 curacin Yes
105 1042 1106 stigmatellin Yes
727 666 223 HSAF (heat stable antifungal factor) Yes
787 655 37 curacin Yes
791 654 13 stigmatellin Yes
798 652 49 stigmatellin Yes
844 642 5774 jamaicamide Yes
89 1090 13 No No
90 1089 10 No No
91 1086 26 No No
92 1080 16 No No
93 1079 10 No No
94 1079 13 No No
And the final plot looks like this:
I don't like the white edge of the spots. The left bottom part of the image where most spots are accumulated looks too white. I already included edgecolors=None
in my code but it seems not working. Does anyone know how to remove the edge color or change it to others?
Thank you very much!
Replace edgecolors=None
with linewidth=0
Something like:
g=sns.scatterplot(x="length", y="coverage", data=df, hue = 'Products',
linewidth=0, alpha = 0.7)