The problem
So I have a lat-lon array with 6
layers (array.size = (192,288,6)
) containing a bunch of data ranging in values from nearly 0
to about 0.65
. When I plot data from every one of the 6
layers ([:,:,0]
, [:,:,1]
, etc.), I have no problems and get a nice map, except for [:,:,4]
. For some reason, when I try to plot this 2D array, I get an error message I don't understand, and it only comes up when I try to include a colorbar. If I nix the colorbar there's no error, but I need that colorbar...
The code
Here's the code I use for a different part of the array, along with the resulting plot. Let's go with [:,:,5]
.
#Set labels
lonlabels = ['0','45E','90E','135E','180','135W','90W','45W','0']
latlabels = ['90S','60S','30S','Eq.','30N','60N','90N']
#Set cmap properties
bounds = np.array([0,0.001,0.01,0.05,0.1,0.2,0.3,0.4,0.5,0.6])
boundlabels = ['0','0.001','0.01','0.05','0.1','0.2','0.3','0.4','0.5','0.6']
cmap = plt.get_cmap('jet')
norm = colors.PowerNorm(0.35,vmax=0.65) #creates logarithmic scale
#Create basemap
fig,ax = plt.subplots(figsize=(15.,10.))
m = Basemap(projection='cyl',llcrnrlat=-90,urcrnrlat=90,llcrnrlon=0,urcrnrlon=360.,lon_0=180.,resolution='c')
m.drawcoastlines(linewidth=2,color='w')
m.drawcountries(linewidth=2,color='w')
m.drawparallels(np.arange(-90,90,30.),linewidth=0.3)
m.drawmeridians(np.arange(-180.,180.,45.),linewidth=0.3)
meshlon,meshlat = np.meshgrid(lon,lat)
x,y = m(meshlon,meshlat)
#Plot variables
trend = m.pcolormesh(x,y,array[:,:,5],cmap='jet',norm=norm,shading='gouraud')
#Set plot properties
#Colorbar
cbar=m.colorbar(trend, size='5%',ticks=bounds,location='bottom',pad=0.8)
cbar.set_label(label='Here is a label',size=25)
cbar.set_ticklabels(boundlabels)
for t in cbar.ax.get_xticklabels():
t.set_fontsize(25)
#Titles & labels
ax.set_title('Here is a title for [:,:,5]',fontsize=35)
ax.set_xlabel('Longitude',fontsize=25)
ax.set_xticks(np.arange(0,405,45))
ax.set_xticklabels(lonlabels,fontsize=20)
ax.set_yticks(np.arange(-90,120,30))
ax.set_yticklabels(latlabels,fontsize=20)
Now when I use the EXACT same code but plot for array[:,:,4]
instead of array[:,:,5]
, I get this error.
ValueError Traceback (most recent call last)
/linuxapps/anaconda/lib/python2.7/site-packages/IPython/core/formatters.pyc in __call__(self, obj)
305 pass
306 else:
--> 307 return printer(obj)
308 # Finally look for special method names
309 method = get_real_method(obj, self.print_method)
[lots of further traceback]
/linuxapps/anaconda/lib/python2.7/site-packages/matplotlib/text.pyc in draw(self, renderer)
755 posy = float(textobj.convert_yunits(textobj._y))
756 if not np.isfinite(posx) or not np.isfinite(posy):
--> 757 raise ValueError("posx and posy should be finite values")
758 posx, posy = trans.transform_point((posx, posy))
759 canvasw, canvash = renderer.get_canvas_width_height()
ValueError: posx and posy should be finite values
I have no idea why it's doing this as my code for every other part of the array plots just fine, and they all use the same meshgrid. There are no NaN
's in the array. Also here's the result if I comment out all the code between #Colorbar
and #Titles & labels
UPDATE: The problem also disappears when I include the colorbar code but changed the PowerNorm
to 1.0
(norm = colors.PowerNorm(1.0,vmax=0.65)
). Anything other than 1.0
generates the error when the colorbar is included.
The question
What could be causing the posx
& posy
error message, and how can I get rid of it so I can make this plot with the colorbar included?
UPDATE
When I run the kernel from scratch, again with the same code (except that I changed the 0.6
bound to 0.65
), I get the following warnings in the array[:,:,4]
block. I'm not sure if they're related, but I'll include them just in case.
/linuxapps/anaconda/lib/python2.7/site-packages/matplotlib/colors.py:1202: RuntimeWarning: invalid value encountered in power
np.power(resdat, gamma, resdat)
[<matplotlib.text.Text at 0x2af62c8e6710>,
<matplotlib.text.Text at 0x2af62c8ffed0>,
<matplotlib.text.Text at 0x2af62cad8e90>,
<matplotlib.text.Text at 0x2af62cadd3d0>,
<matplotlib.text.Text at 0x2af62caddad0>,
<matplotlib.text.Text at 0x2af62cae7250>,
<matplotlib.text.Text at 0x2af62cacd050>]
/linuxapps/anaconda/lib/python2.7/site-packages/matplotlib/axis.py:1015: UserWarning: Unable to find pixel distance along axis for interval padding of ticks; assuming no interval padding needed.
warnings.warn("Unable to find pixel distance along axis "
/linuxapps/anaconda/lib/python2.7/site-packages/matplotlib/axis.py:1025: UserWarning: Unable to find pixel distance along axis for interval padding of ticks; assuming no interval padding needed.
warnings.warn("Unable to find pixel distance along axis "