How do I execute a bash command from Ipython/Jupyter notebook passing the value of a python variable as an argument like in this example:
py_var="foo"
!grep py_var bar.txt
(obviously I want to grep for foo
and not the literal string py_var
)
Prefix your variable names with a $
.
Example
Say you want to copy a file file1
to a path stored in a python variable named dir_pth
:
dir_path = "/home/foo/bar"
!cp file1 $dir_path
from Ipython or Jupyter notebook
EDIT
Thanks to the suggestion from Catbuilts, if you want to concatenate multiple strings to form the path, use {..}
instead of $..$
.
A general solution that works in both situations is to stick with {..}
dir_path = "/home/foo/bar"
!cp file1 {dir_path}
And if you want to concatinate another string sub_dir
to your path, then:
!cp file1 {dir_path + sub_dir}
EDIT 2
For a related discussion on the use of raw strings (prefixed with r
) to pass the variables, see Passing Ipython variables as string arguments to shell command