I have a problem with running a python Hello World mpi4py code on a virtual machine.
The hello.py code is:
#!/usr/bin/python
#hello.py
from mpi4py import MPI
comm = MPI.COMM_WORLD
size = comm.Get_size()
rank = comm.Get_rank()
print "hello world from process ", rank,"of", size
I've tried to run it using mpiexec and mpirun, but it is not running well. The output:
$ mpirun -c 4 python hello.py
hello world from process 0 of 1
hello world from process 0 of 1
hello world from process 0 of 1
hello world from process 0 of 1
And from mpiexec:
$ mpiexec -n 4 python hello.py
hello world from process 0 of 1
hello world from process 0 of 1
hello world from process 0 of 1
hello world from process 0 of 1
They seem not getting rank and size of comm. What can cause this? How to solve it?
mpiexec --version
mpiexec (OpenRTE) 1.6.5
mpirun --version
mpirun (Open MPI) 1.6.5
The system is Ubuntu 14.04 on the Virtal Machine.
Any ideas why? Thanks!
I had the same issue when running the python module emcee
. It would give me an error:
"ValueError: Tried to create an MPI pool, but there was only one MPI process available.
Need at least two."
The solution I found for my particular cluster was to use a different MPI. My code worked with intel-mpi
and mpich2
but not openmpi
. For this system, all I had to do was switch the MPI. In my PBS
script I used module load mpich2
instead of module load openmpi
. In this case mpiexec
and mpirun
worked correctly.