I am using the python package pymongo to retrieve data from a mongodb database.
>>> r = collection.find() # returns an object of class 'Cursor'
Then I convert to a list
>>> l = list(r) # returns a 'list' of 'dict'
here is what print(l) returns:
>>> [{u'date': datetime.datetime(2009, 11, 10, 10, 45), u'_id': 1, u'name': u'name1', u'value': 11},{u'date': datetime.datetime(2013, 11, 10, 10, 45), u'_id': 2, u'name': u'name2', u'value': 22}]
Now I need to convert to JSON so that I can manipulate it.
>>> json.dumps(l)
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/usr/lib/python2.7/json/__init__.py", line 231, in dumps
return _default_encoder.encode(obj)
File "/usr/lib/python2.7/json/encoder.py", line 201, in encode
chunks = self.iterencode(o, _one_shot=True)
File "/usr/lib/python2.7/json/encoder.py", line 264, in iterencode
return _iterencode(o, 0)
File "/usr/lib/python2.7/json/encoder.py", line 178, in default
raise TypeError(repr(o) + " is not JSON serializable")
TypeError: datetime.datetime(2009, 11, 12, 11, 14) is not JSON serializable
I have also tried to follow http://api.mongodb.org/python/1.7/api/pymongo/json_util.html without success: Edit: the recent version of the link is http://api.mongodb.org/python/current/api/bson/json_util.html
>>> json.dumps(l, default=json_util.default)
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
NameError: name 'json_util' is not defined
Note: precisely I need to push this result to R using the R package rPython and its function rPython::python.get("l")
Side Question: What is the u (u'Date', u'name', etc..) before each field in the list of dict?
The pymongo documentation you pointed is obsolete. If you're using version 1.7 I recommend updating. With a more recent version you can do this:
from bson.json_util import dumps
dumps(l)
http://api.mongodb.org/python/current/api/bson/json_util.html
Side answer: u'name'
, u'date'
, u'_id'
etc are the names of the fields of the document on the database.