matplotlib: colorbars and its text labels

dimka picture dimka · Apr 9, 2013 · Viewed 248.8k times · Source

I'd like to create a colorbar legend for a heatmap, such that the labels are in the center of each discrete color. Example borrowed from here:

import matplotlib.pyplot as plt
import numpy as np
from matplotlib.colors import ListedColormap

#discrete color scheme
cMap = ListedColormap(['white', 'green', 'blue','red'])

#data
np.random.seed(42)
data = np.random.rand(4, 4)
fig, ax = plt.subplots()
heatmap = ax.pcolor(data, cmap=cMap)

#legend
cbar = plt.colorbar(heatmap)
cbar.ax.set_yticklabels(['0','1','2','>3'])
cbar.set_label('# of contacts', rotation=270)

# put the major ticks at the middle of each cell
ax.set_xticks(np.arange(data.shape[1]) + 0.5, minor=False)
ax.set_yticks(np.arange(data.shape[0]) + 0.5, minor=False)
ax.invert_yaxis()

#labels
column_labels = list('ABCD')
row_labels = list('WXYZ')
ax.set_xticklabels(column_labels, minor=False)
ax.set_yticklabels(row_labels, minor=False)

plt.show()

This generates the following plot:

pmesh plot

Ideally I'd like to generate a legend bar which has the four colors and for each color, a label in its center: 0,1,2,>3. How can this be achieved?

Answer

tacaswell picture tacaswell · Apr 10, 2013
import matplotlib.pyplot as plt
import numpy as np
from matplotlib.colors import ListedColormap

#discrete color scheme
cMap = ListedColormap(['white', 'green', 'blue','red'])

#data
np.random.seed(42)
data = np.random.rand(4, 4)
fig, ax = plt.subplots()
heatmap = ax.pcolor(data, cmap=cMap)

#legend
cbar = plt.colorbar(heatmap)

cbar.ax.get_yaxis().set_ticks([])
for j, lab in enumerate(['$0$','$1$','$2$','$>3$']):
    cbar.ax.text(.5, (2 * j + 1) / 8.0, lab, ha='center', va='center')
cbar.ax.get_yaxis().labelpad = 15
cbar.ax.set_ylabel('# of contacts', rotation=270)


# put the major ticks at the middle of each cell
ax.set_xticks(np.arange(data.shape[1]) + 0.5, minor=False)
ax.set_yticks(np.arange(data.shape[0]) + 0.5, minor=False)
ax.invert_yaxis()

#labels
column_labels = list('ABCD')
row_labels = list('WXYZ')
ax.set_xticklabels(column_labels, minor=False)
ax.set_yticklabels(row_labels, minor=False)

plt.show()

You were very close. Once you have a reference to the color bar axis, you can do what ever you want to it, including putting text labels in the middle. You might want to play with the formatting to make it more visible.

demo