Parsing command line arguments in R scripts

David B picture David B · Aug 8, 2010 · Viewed 29.3k times · Source

Is there any convenient way to automatically parse command line arguments passed to R scripts?

Something like perl's Getopt::Long?

Answer

rcs picture rcs · Aug 8, 2010

There are three packages on CRAN:

  • getopt: C-like getopt behavior
  • optparse: a command line parser inspired by Python's optparse library
  • argparse: a command line optional and positional argument parser (inspired by Python's argparse library). This package requires that a Python interpreter be installed with the argparse and json (or simplejson) modules.

Update:

  • docopt: lets you define a command line interface by just giving it a description in the specific format. It is a port a docopt.py.
  • argparser: cross-platform command-line argument parser written purely in R with no external dependencies. This package is useful with the Rscript front-end and facilitates turning an R script into an executable script.
  • minimist: A binding to the minimist JavaScript library. This module implements the guts of optimist's argument parser without all the fanciful decoration (no external dependencies)
  • optigrab: parse options from the command-line using a simple, clean syntax. It requires little or no specification and supports short and long options, GNU-, Java- or Microsoft- style syntaxes, verb commands and more.