Docker-compose and mongoDB: Failed to start up WiredTiger under any compatibility version?

java12399900 picture java12399900 · Apr 10, 2020 · Viewed 7.3k times · Source

I have the following docker-compose file:

version: "3"

services:

    #
    # APIs
    #----------------------------------------------
       pokerstats:
        image: pokerstats
        container_name: pokerstats
        ports:
          - 8080:8080
        depends_on: 
          - db

    #
    # Utilities
    #----------------------------------------------
      db:
        image: mongo
        container_name: mongo
        volumes:
          - ./data/db:/data/db
        ports:
          - "27018:27017"
        environment:
          MONGO_INITDB_ROOT_USERNAME: admin
          MONGO_INITDB_ROOT_PASSWORD: admin
          MONGO_INITDB_DATABASE: pokerStats

This was working fine before I added volumes. However not when I run: docker-compose up -d the mongo container stops immediately and in the logs I see the error:

2020-04-10T19:17:17.313+0000 I  STORAGE  [initandlisten] wiredtiger_open config: create,cache_size=1457M,cache_overflow=(file_max=0M),session_max=33000,eviction=(threads_min=4,threads_max=4),config_base=false,statistics=(fast),log=(enabled=true,archive=true,path=journal,compressor=snappy),file_manager=(close_idle_time=100000,close_scan_interval=10,close_handle_minimum=250),statistics_log=(wait=0),verbose=[recovery_progress,checkpoint_progress],
2020-04-10T19:17:17.772+0000 E  STORAGE  [initandlisten] WiredTiger error (1) [1586546237:772524][29:0x7fe9f284fb00], connection: __posix_open_file, 667: /data/db/WiredTiger.wt: handle-open: open: Operation not permitted Raw: [1586546237:772524][29:0x7fe9f284fb00], connection: __posix_open_file, 667: /data/db/WiredTiger.wt: handle-open: open: Operation not permitted
2020-04-10T19:17:17.784+0000 E  STORAGE  [initandlisten] WiredTiger error (17) [1586546237:784001][29:0x7fe9f284fb00], connection: __posix_open_file, 667: /data/db/WiredTiger.wt: handle-open: open: File exists Raw: [1586546237:784001][29:0x7fe9f284fb00], connection: __posix_open_file, 667: /data/db/WiredTiger.wt: handle-open: open: File exists
2020-04-10T19:17:17.785+0000 I  STORAGE  [initandlisten] WiredTiger message unexpected file WiredTiger.wt found, renamed to WiredTiger.wt.1
2020-04-10T19:17:17.788+0000 E  STORAGE  [initandlisten] WiredTiger error (1) [1586546237:788283][29:0x7fe9f284fb00], connection: __posix_open_file, 667: /data/db/WiredTiger.wt: handle-open: open: Operation not permitted Raw: [1586546237:788283][29:0x7fe9f284fb00], connection: __posix_open_file, 667: /data/db/WiredTiger.wt: handle-open: open: Operation not permitted
2020-04-10T19:17:17.799+0000 E  STORAGE  [initandlisten] WiredTiger error (17) [1586546237:799215][29:0x7fe9f284fb00], connection: __posix_open_file, 667: /data/db/WiredTiger.wt: handle-open: open: File exists Raw: [1586546237:799215][29:0x7fe9f284fb00], connection: __posix_open_file, 667: /data/db/WiredTiger.wt: handle-open: open: File exists
2020-04-10T19:17:17.801+0000 I  STORAGE  [initandlisten] WiredTiger message unexpected file WiredTiger.wt found, renamed to WiredTiger.wt.2
2020-04-10T19:17:17.803+0000 E  STORAGE  [initandlisten] WiredTiger error (1) [1586546237:803211][29:0x7fe9f284fb00], connection: __posix_open_file, 667: /data/db/WiredTiger.wt: handle-open: open: Operation not permitted Raw: [1586546237:803211][29:0x7fe9f284fb00], connection: __posix_open_file, 667: /data/db/WiredTiger.wt: handle-open: open: Operation not permitted
2020-04-10T19:17:17.805+0000 W  STORAGE  [initandlisten] Failed to start up WiredTiger under any compatibility version.
2020-04-10T19:17:17.806+0000 F  STORAGE  [initandlisten] Reason: 1: Operation not permitted
2020-04-10T19:17:17.806+0000 F  -        [initandlisten] Fatal Assertion 28595 at src/mongo/db/storage/wiredtiger/wiredtiger_kv_engine.cpp 860

How can I resolve this? I want a mongo volume that will keep my data persisted if the container goes down.

Edit: for reference I am running docker desktop 2.2.0.3 on a Windows 10 Pro machine.

Answer

java12399900 picture java12399900 · Apr 10, 2020

I was able to solve this issue by added a volume to my docker-compose file and referencing it in the mongo section of the compose file as follows:

  db:
    image: mongo
    container_name: mongo
    volumes:
      - mongodata:/data/db
    ports:
      - "27018:27017"
    environment:
      MONGO_INITDB_ROOT_USERNAME: admin
      MONGO_INITDB_ROOT_PASSWORD: admin
      MONGO_INITDB_DATABASE: golfStats

volumes:
  mongodata: