I have a section of code that finds Harris corners in a sequence of images. I need to do this for 92 images, but it's rather slow. As such, I'd like to run the code in parallel. The code I have below has an error related to the variable "corners"
%% Harris corners
max_pts = 900;
corners = zeros(max_pts,2,size(images,3));
parfor i = 1:size(images,3)
I = images(:,:,i);
[y x] = get_corners(I,max_pts);
corners(1:length(y),:,i) = [y x];
end
Which says:
MATLAB runs loops in parfor functions by dividing the loop iterations into groups, and then sending them to MATLAB workers where they run in parallel. For MATLAB to do this in a repeatable, reliable manner, it must be able to classify all the variables used in the loop. The code uses the indicated variable in a way that is incompatible with classification. Suggested Action Fix the usage of the indicated variable. For more information about variable classification and other restrictions on parfor loop iterations, see “Classification of Variables” in the Parallel Computing Toolbox documentation.
Any ideas how to fix this?
Thanks!
Answer
As mentioned by @Chris, the line
corners(1:length(y),:,i) = [y x];
is the problem. An easy way to make sure corners is sliceable is to use a cell array
max_pts = 900;
cornerCell = cell(size(images,3),1);
parfor i = 1:size(images,3)
I = images(:,:,i);
[y x] = get_corners(I,max_pts);
cornerCell{i} = [y x];
end
If you don't want corners to be a cell array (note that to plot corners for the ith image, you can call imshow(images(:,:,i),[]),hold on, plot(cornerCell{i}(:,1),cornerCell{i}(:,2),'o')), you can always convert back to your original 900-by-2-by-nImages array in a loop that won't cost you any noticeable time:
corners = zeros(max_pts,2,size(images,3));
for i=1:size(images,3)
corners(1:size(cornerCell{i},1),:,i) = cornerCell{i};
end