parameter for shell scripts that is started with qsub

linux shell grid-computing qsub
Martin picture Martin · Aug 17, 2010 · Viewed 32.8k times · Source

how can I parametrize a shell script that is executed on a grid (started with qsub) ? I have a shell script, where I use getopts to read the parameters.

When I start (qsub script.sh -r firstparam -s secondparam ..) this working script with qsub I receive error messages,

qsub: invalid option -- s

qsub: illegal -r value

as qsub thinks the parameter are for itself. Yet I have not found any solution.

Thanks

Answer

volks picture volks · Jan 19, 2011

Using the qsub -v option is the proper way:

qsub -v par_name=par_value[,par_name=par_value...] script.sh

par_name can be used as variable in the shell script.

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