How to read PGM images in Java?

Question 1

How to read PGM images in Java?

java javax.imageio pgm

Magsol · Sep 3, 2010 · Viewed 14.1k times · Source

Answer

Answer

The problem with your code is that you are using the wrong class to read raw data from the file. As the BufferedReader documentation says:

public int read() throws IOException

Reads a single character.

Returns: The character read, as an integer in the range 0 to 65535 (0x00-0xffff), or -1 if the end of the stream has been reached

So each call to the read() method of BufferedReader actually consumes one or two bytes (based on character encoding) from the input stream, which is not what you want. This also explains why you get a lot of -1: the stream ended much earlier than you thought.

Since PGM contains values as ASCII decimal, it is easy to parse using the Scanner class.

Here's an almost untested code that shows how to read a PGM image assuming that:

it contains a single comment after the magic number (i.e. it does not have lines that start with a # except the second one)
the PGM file is exactly 4 lines long.

Here's the code:

String filePath = "image.pgm";
fileInputStream = new FileInputStream(filePath);
Scanner scan = new Scanner(fileInputStream);
// Discard the magic number
scan.nextLine();
// Discard the comment line
scan.nextLine();
// Read pic width, height and max value
int picWidth = scan.nextInt();
int picHeight = scan.nextInt();
int maxvalue = scan.nextInt();

fileInputStream.close();
            
 // Now parse the file as binary data
 fileInputStream = new FileInputStream(filePath);
 DataInputStream dis = new DataInputStream(fileInputStream);
 
 // look for 4 lines (i.e.: the header) and discard them
 int numnewlines = 4;
 while (numnewlines > 0) {
     char c;
     do {
         c = (char)(dis.readUnsignedByte());
     } while (c != '\n');
     numnewlines--;
 }

 // read the image data
 int[][] data2D = new int[picHeight][picWidth];
 for (int row = 0; row < picHeight; row++) {
     for (int col = 0; col < picWidth; col++) {
         data2D[row][col] = dis.readUnsignedByte();
         System.out.print(data2D[row][col] + " ");
     }
     System.out.println();
 }

Need to implement: support for comment lines, values for each element should be divided by maxvalue, error checking for malformed files, exception handling. I tested it on a PGM file using UNIX end-of-lines, but it should work on Windows too.

Let me stress that this is not a robust nor complete implementation of a PGM parser. This code is intended just as proof of concept that maybe accomplishes just enough for your needs.

If you really need a robust PGM parser, you may use the tools provided by Netpbm.

Question 2

I feel like I'm missing something simple here (as usual).

I'm trying to read PGM images using Java. Matlab does it just fine - outputting the image pixels (for example, a small 32x32 image) in Matlab gives me something like this:

1 0 11 49 94 118 118 106 95 88 85 96 124 143 142 133

My Java reader, however, outputs this:

1 0 11 49 94 118 118 106 95 88 85 96 124 65533 65533 65533

It seems like pixel values above 127 are filled in with 65533, though it does get some random values incorrect, and even assigns almost the entire bottom row to the value of -1.

Here's the code I'm using:

filePath = 'imagepath.pgm';
FileInputStream fileInputStream = new FileInputStream(filePath);
BufferedReader bufferedReader = new BufferedReader(new InputStreamReader(fileInputStream));

// read the header information ...

int [][] data2D = new int [picWidth] [picHeight];

for (int row = 0; row < picHeight; row++) {
  for (int col = 0; col < picWidth; col++) {
    data2D[row][col] = bufferedReader.read();
    System.out.print(data2D[row][col] + " ");
  }
  System.out.println();
}

fileInputStream.close();

Any ideas would be greatly appreciated.

Edit Here are the unsigned PGM values:

     1     0    11    49    94   118   118   106    95    88    85    96   124   143   142   133
    30    26    29    57    96   122   125   114   102    94    91   101   127   146   145   136
    96    85    70    75   101   128   136   126   111   106   106   112   131   149   153   147
   163   147   114    93    99   120   132   123   110   113   124   129   137   154   166   168
   215   195   149   105    88    99   114   111   106   123   148   158   160   174   191   197
   245   224   173   115    81    82   100   109   117   144   179   194   194   205   222   230
   235   217   170   115    78    78   113   117   100    83    80   212   214   226   244   253
   178   167   135    93    68    78   123   129   106    77    69   202   204   222   244   255
   114   110    92    64    54    81   107   105    83    59    56   182   184   201   222   231
    79    80    71    52    55    97    67    55    41    33    42   184   179   181   185   183
    62    66    65    52    63   115    29    16    12    17    30   209   197   174   150   132
    40    47    52    44    55   109   171   196   188   186   208   229   218   179   136   107
    31    38    44    37    43    89   145   167   158   159   191   223   219   179   133   105
    48    52    56    51    57    91   128   133   117   120   157   196   200   168   128   105
    64    67    70    73    87   114   127   107    79    81   118   159   173   154   123   104
    63    67    73    83   107   132   129    91    54    54    88   130   153   146   123   106

The header looks like this:

P5
# MatLab PGMWRITE file, saved 27-Jun-2002
16 16
255

Edit #2

Here's the full output to the proof of concept code below:

Skipping unknow token: ""
Skipping unknow token: "1^vvj_XU`|���"
Skipping unknow token: ""
Skipping unknow token: "9`z}rf^[e���`UFKe��~ojjp������r]cx�{nq|������ÕiXcroj{��������sQRdmu��������٪sNNqudSP�����]DN{�jME�����rn\@6QkiS;8�����OPG47aC7)!*�����>BA4?s"
Skipping unknow token: ""
Skipping unknow token: ""
Skipping unknow token: "�Ů��(/4,7m�ļ���ڳ�k"
Skipping unknow token: "&,%+Y������۳�i04839[��ux��Ȩ�i@CFIWrkOQv���{h?CISk��[66X���{j"
Exception in thread "main" java.util.NoSuchElementException
    at java.util.Scanner.throwFor(Scanner.java:838)
    at java.util.Scanner.next(Scanner.java:1347)
    at Test.main(Test.java:49)

Line 49 referred to in the thrown exception is:

System.out.println(String.format("Skipping unknow token: \"%s\"", scan.next()));

The problem, I'm sure, has something to do with the fact that these image files consist of both ASCII text/numbers as well as binary image data. But if Java has no problem reading PNGs, why the lack of support for PGMs?

Edit 3

Ok, I found an implementation that works...unfortunately, it's deprecated:

  filePath = "imagepath.pgm"
  FileInputStream fileInputStream = new FileInputStream(filePath);
  DataInputStream dis = new DataInputStream(fileInputStream);
  StreamTokenizer streamTokenizer = new StreamTokenizer(dis);

  // read header text using StreamTokenizer.nextToken()

  data2D = new int [picWidth] [picHeight];
  for (int row = 0; row < picHeight; row++) {
    for (int col = 0; col < picWidth; col++) {
      data2D[row][col] = dis.readUnsignedByte();
      System.out.print(data2D[row][col] + " ");
    }
    System.out.println();
  }

According to the Java documentation, the StreamTokenizer(InputStream) constructor is deprecated, because the DataInputStream.readLine() method does not correctly convert raw bytes to characters. However, it seems to work in this specific case on the header, and obviously works for the ensuing binary image data.

Unfortunately, it's still deprecated, and it seems that by intermixing a BufferedReader as the documentation suggests only results in EOFExceptions after reading the header and attempting to use the DataInputStream to read the raw bytes. Still looking for a solution...

How to read PGM images in Java?

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