Spark + s3 - error - java.lang.ClassNotFoundException: Class org.apache.hadoop.fs.s3a.S3AFileSystem not found

apache-spark amazon-s3 pyspark apache-zeppelin
peterlandis picture peterlandis · Oct 16, 2019 · Viewed 22.1k times · Source

I have a spark ec2 cluster where I am submitting a pyspark program from a Zeppelin notebook. I have loaded the hadoop-aws-2.7.3.jar and aws-java-sdk-1.11.179.jar and place them in the /opt/spark/jars directory of the spark instances. I get a java.lang.NoClassDefFoundError: com/amazonaws/AmazonServiceException

Why is spark not seeing the jars? Do I have to have to jars in all the slaves and specify a spark-defaults.conf for the master and slaves? Is there something that needs to be configured in zeppelin to recognize the new jar files?

I have placed jar files /opt/spark/jars on the spark master. I have created a spark-defaults.conf and added the lines

spark.hadoop.fs.s3a.access.key     [ACCESS KEY]
spark.hadoop.fs.s3a.secret.key     [SECRET KEY]
spark.hadoop.fs.s3a.impl           org.apache.hadoop.fs.s3a.S3AFileSystem
spark.driver.extraClassPath        /opt/spark/jars/hadoop-aws-2.7.3.jar:/opt/spark/jars/aws-java-sdk-1.11.179.jar

I have zeppelin interpreter sending a spark submit to the spark master.

I have also placed the jars in the /opt/spark/jars in the slaves too but did not create a spark-deafults.conf.

%spark.pyspark

#importing necessary libaries
from pyspark import SparkContext
from pyspark.sql import SparkSession
from pyspark.sql.functions import *
from pyspark.sql.types import StringType
from pyspark import SQLContext
from itertools import islice
from pyspark.sql.functions import col

# add aws credentials
sc._jsc.hadoopConfiguration().set("fs.s3n.awsAccessKeyId", "[ACCESS KEY]")
sc._jsc.hadoopConfiguration().set("fs.s3n.awsSecretAccessKey", "[SECRET KEY]")
sc._jsc.hadoopConfiguration().set("fs.s3a.impl", "org.apache.hadoop.fs.s3a.S3AFileSystem")

#creating the context
sqlContext = SQLContext(sc)

#reading the first csv file and store it in an RDD
rdd1= sc.textFile("s3a://filepath/baby-names.csv").map(lambda line: line.split(","))

#removing the first row as it contains the header
rdd1 = rdd1.mapPartitionsWithIndex(
lambda idx, it: islice(it, 1, None) if idx == 0 else it
)

#converting the RDD into a dataframe
df1 = rdd1.toDF(['year','name', 'percent', 'sex'])

#print the dataframe
df1.show()

Error thrown:


Py4JJavaError: An error occurred while calling z:org.apache.spark.api.python.PythonRDD.runJob.
: org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 1.0 failed 4 times, most recent failure: Lost task 0.3 in stage 1.0 (TID 7, 10.11.93.90, executor 1): java.lang.NoClassDefFoundError: com/amazonaws/AmazonServiceException
    at java.lang.Class.forName0(Native Method)
    at java.lang.Class.forName(Class.java:348)
    at org.apache.hadoop.conf.Configuration.getClassByNameOrNull(Configuration.java:2134)
    at org.apache.hadoop.conf.Configuration.getClassByName(Configuration.java:2099)
    at org.apache.hadoop.conf.Configuration.getClass(Configuration.java:2193)
    at org.apache.hadoop.fs.FileSystem.getFileSystemClass(FileSystem.java:2654)
    at org.apache.hadoop.fs.FileSystem.createFileSystem(FileSystem.java:2667)
    at org.apache.hadoop.fs.FileSystem.access$200(FileSystem.java:94)
    at org.apache.hadoop.fs.FileSystem$Cache.getInternal(FileSystem.java:2703)
    at org.apache.hadoop.fs.FileSystem$Cache.get(FileSystem.java:2685)
    at org.apache.hadoop.fs.FileSystem.get(FileSystem.java:373)
    at org.apache.hadoop.fs.Path.getFileSystem(Path.java:295)
    at org.apache.hadoop.mapred.LineRecordReader.<init>(LineRecordReader.java:108)
    at org.apache.hadoop.mapred.TextInputFormat.getRecordReader(TextInputFormat.java:67)
    at org.apache.spark.rdd.HadoopRDD$$anon$1.liftedTree1$1(HadoopRDD.scala:267)
    at org.apache.spark.rdd.HadoopRDD$$anon$1.<init>(HadoopRDD.scala:266)
    at org.apache.spark.rdd.HadoopRDD.compute(HadoopRDD.scala:224)
    at org.apache.spark.rdd.HadoopRDD.compute(HadoopRDD.scala:95)
    at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
    at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
    at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
    at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
    at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
    at org.apache.spark.api.python.PythonRDD.compute(PythonRDD.scala:65)
    at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
    at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
    at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
    at org.apache.spark.scheduler.Task.run(Task.scala:123)
    at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
    at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
    at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
    at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.ClassNotFoundException: com.amazonaws.AmazonServiceException
    at java.net.URLClassLoader.findClass(URLClassLoader.java:382)
    at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
    at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:349)
    at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
    ... 34 more

Driver stacktrace:
    at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1889)
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1877)
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1876)
    at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
    at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
    at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1876)
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:926)
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:926)
    at scala.Option.foreach(Option.scala:257)
    at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:926)
    at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:2110)
    at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2059)
    at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2048)
    at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:49)
    at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:737)
    at org.apache.spark.SparkContext.runJob(SparkContext.scala:2061)
    at org.apache.spark.SparkContext.runJob(SparkContext.scala:2082)
    at org.apache.spark.SparkContext.runJob(SparkContext.scala:2101)
    at org.apache.spark.api.python.PythonRDD$.runJob(PythonRDD.scala:153)
    at org.apache.spark.api.python.PythonRDD.runJob(PythonRDD.scala)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244)
    at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
    at py4j.Gateway.invoke(Gateway.java:282)
    at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
    at py4j.commands.CallCommand.execute(CallCommand.java:79)
    at py4j.GatewayConnection.run(GatewayConnection.java:238)
    at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.NoClassDefFoundError: com/amazonaws/AmazonServiceException
    at java.lang.Class.forName0(Native Method)
    at java.lang.Class.forName(Class.java:348)
    at org.apache.hadoop.conf.Configuration.getClassByNameOrNull(Configuration.java:2134)
    at org.apache.hadoop.conf.Configuration.getClassByName(Configuration.java:2099)
    at org.apache.hadoop.conf.Configuration.getClass(Configuration.java:2193)
    at org.apache.hadoop.fs.FileSystem.getFileSystemClass(FileSystem.java:2654)
    at org.apache.hadoop.fs.FileSystem.createFileSystem(FileSystem.java:2667)
    at org.apache.hadoop.fs.FileSystem.access$200(FileSystem.java:94)
    at org.apache.hadoop.fs.FileSystem$Cache.getInternal(FileSystem.java:2703)
    at org.apache.hadoop.fs.FileSystem$Cache.get(FileSystem.java:2685)
    at org.apache.hadoop.fs.FileSystem.get(FileSystem.java:373)
    at org.apache.hadoop.fs.Path.getFileSystem(Path.java:295)
    at org.apache.hadoop.mapred.LineRecordReader.<init>(LineRecordReader.java:108)
    at org.apache.hadoop.mapred.TextInputFormat.getRecordReader(TextInputFormat.java:67)
    at org.apache.spark.rdd.HadoopRDD$$anon$1.liftedTree1$1(HadoopRDD.scala:267)
    at org.apache.spark.rdd.HadoopRDD$$anon$1.<init>(HadoopRDD.scala:266)
    at org.apache.spark.rdd.HadoopRDD.compute(HadoopRDD.scala:224)
    at org.apache.spark.rdd.HadoopRDD.compute(HadoopRDD.scala:95)
    at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
    at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
    at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
    at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
    at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
    at org.apache.spark.api.python.PythonRDD.compute(PythonRDD.scala:65)
    at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
    at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
    at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
    at org.apache.spark.scheduler.Task.run(Task.scala:123)
    at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
    at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
    at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
    ... 1 more
Caused by: java.lang.ClassNotFoundException: com.amazonaws.AmazonServiceException
    at java.net.URLClassLoader.findClass(URLClassLoader.java:382)
    at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
    at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:349)
    at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
    ... 34 more

Answer

peterlandis picture peterlandis · Oct 17, 2019

I was able to address the above to make sure I had the correct versions of the hadoop aws jar per the version of spark hadoop that I was running, downloading the correct version of aws-java-sdk, and lastly downloading the dependency jets3t library

enter image description here

In the /opt/spark/jars

sudo wget https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk/1.11.30/aws-java-sdk-1.11.30.jar
sudo wget https://repo1.maven.org/maven2/org/apache/hadoop/hadoop-aws/2.7.3/hadoop-aws-2.7.3.jar
sudo wget https://repo1.maven.org/maven2/net/java/dev/jets3t/jets3t/0.9.4/jets3t-0.9.4.jar

Testing it out

scala> sc.hadoopConfiguration.set("fs.s3n.awsAccessKeyId", [ACCESS KEY ID])
scala> sc.hadoopConfiguration.set("fs.s3n.awsSecretAccessKey", [SECRET ACCESS KEY] )
scala> val myRDD = sc.textFile("s3n://adp-px/baby-names.csv")
scala> myRDD.count()
res2: Long = 49

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